Metrics
Category Metrics
Overview
a metric class for describing FP failing reads from an Illumina HiSeqX lane *This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| TILE | The Tile that is described by this metric |
| X | The X coordinate of the read within the tile |
| Y | The Y coordinate of the read within the tile |
| NUM_N | The number of Ns found in this read |
| NUM_Q_GT_TWO | The number of Quality scores greater than 2 found in this read |
| CLASSIFICATION | The classification of this read: {EMPTY, POLYCLONAL, MISALIGNED, UNKNOWN} (See PFFailSummaryMetric for explanation regarding the possible classification.) |
GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.
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