Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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Counts of genotypes w.r.t. the reference allele: 0/0, 0/*, */*, i.e. all alts lumped together

Category Variant Annotations

Overview

INFO level annotation of the counts of genotypes with respect to the reference allele. List of three counts in the following order: hom ref counts, het counts (of any allele), hom var counts (of any allele). In other words all alt alleles are lumped together.

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GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.

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