Metrics
Category Metrics
Overview
Class that holds metrics about the Genotype Concordance contingency tables.This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| VARIANT_TYPE | The type of the event (i.e. either SNP or INDEL) |
| TRUTH_SAMPLE | The name of the 'truth' sample |
| CALL_SAMPLE | The name of the 'call' sample |
| TP_COUNT | The TP (true positive) count across all variants |
| TN_COUNT | The TN (true negative) count across all variants |
| FP_COUNT | The FP (false positive) count across all variants |
| FN_COUNT | The FN (false negative) count across all variants |
| EMPTY_COUNT | The empty (no contingency info) count across all variants |
GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.
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