Metrics
Category Metrics
Overview
This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| SAMPLE | The sample name |
| ESTIMATE | The estimate of contamination from the model (on the 0.0-1.0 scale) |
| STDERR | The standard error of the estimate |
| TVAL | The test statistic for the estimate |
| PVAL | The p-value of the estimate |
| LOG10_PVAL | The log p-value of the estimate |
| CALL_RATE | The call rate of the sample (number of non-missing genotypes) |
| NHOM | The number of homozygous genotypes used to fit the model |
GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.
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