Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

SecondOfPairReadFilter Follow

Avatar
GATK Team

Keep only paired reads that are second of pair

Category Read Filters

Overview

Keep only paired reads (0x1) that are second of pair (0x80).

Return to top

GATK version 4.5.0.0 built at Tue, 9 Jan 2024 14:37:17 -0500.

Related articles

0 comments

Please sign in to leave a comment.

Powered by Zendesk