Filters out reads where the alignment does not match the contents of the header
Category Read Filters
Overview
Filter out reads where the alignment does not match the contents of the header.The read does not match the contents of the header if:
- It is aligned to a non-existing contig
- It is aligned to a point after the end of the contig
GATK version 4.4.0.0 built at Thu, 16 Mar 2023 15:00:37 -0400.
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